PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013635245.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 370aa MW: 41623.3 Da PI: 7.1861

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013635245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	210	229	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_013635245.1 210 FSCPVCFKTFNRYNNMQMHM 229 89*****************9 PP
2	zf-C2H2	14.4	0.00011	294	316	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_013635245.1 294 FMCRKCGKAFAVRGDWRTHEKNC 316 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.38	210	232	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.3E-6	210	229	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	210	237	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	212	232	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.7E-6	276	314	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	290	314	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	294	314	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	294	314	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MADPYSNFFN GWFKPNPFHN YLNSSSNPSS PPPPPPPSSF FLIPHPGDLR RPPPTRPPSP 60 PLREALPLLS LSPVNKQQNY HHDLIQEPPS TSMDVDYGHQ HHQVDHNLDE DDHDVTVSLS 120 IGLPSPSTRD MASLLMLSSS SSSSRTTNHH ENINDKKDPD NDYYHGSAGG GEDDDEDSAG 180 GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW GHGSQYRKGP 240 ESLRGTQPTG MLRLPCYCCS PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG 300 KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHGAYGI DGFDEEDEPA 360 SEVEQLDNDQ

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MADPYSNFFN GWFKPNPFHN YLNSSSNPSS PPPPPPPSSF FLIPHPGDLR RPPPTRPPSP  60
PLREALPLLS LSPVNKQQNY HHDLIQEPPS TSMDVDYGHQ HHQVDHNLDE DDHDVTVSLS  120
IGLPSPSTRD MASLLMLSSS SSSSRTTNHH ENINDKKDPD NDYYHGSAGG GEDDDEDSAG  180
GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW GHGSQYRKGP  240
ESLRGTQPTG MLRLPCYCCS PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG  300
KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHGAYGI DGFDEEDEPA  360
SEVEQLDNDQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013635245.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF254447	0.0	AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBank	BT021089	0.0	BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635245.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	0.0	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D3BX84	0.0	A0A0D3BX84_BRAOL; Uncharacterized protein
STRING	Bo4g111000.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-177	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]