PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635243.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 179aa    MW: 20213.4 Da    PI: 9.623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294870123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+Fs+   L  H  +H
  XP_013635243.1 48 FECKTCNKRFSSFQALGGHRASH 70
                    89**********99999998887 PP
2zf-C2H216.52.4e-0594116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+sF +   L  H+r+H
  XP_013635243.1  94 HECTICGQSFGTGQALGGHMRRH 116
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124772IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-947116No hitNo description
SMARTSM003550.0934870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5334875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-580117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.3E-1293118IPR007087Zinc finger, C2H2
SMARTSM003550.0194116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.28494121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRERSEFEE SIKNLDIAKC LMILAQTSSM VKQIGVNQYA ESNSSNRFEC KTCNKRFSSF  60
QALGGHRASH KKPKLTVDQK VVKQYLTKEG TQAHECTICG QSFGTGQALG GHMRRHRSSM  120
MVEPSELISP VIHDMPVLKR CSSSKRVLSL DLNLTPLEND LEILFGKTFF PNIDMKFVV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635243.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635243.11e-132PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD43e-99ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0D3C4S61e-131A0A0D3C4S6_BRAOL; Uncharacterized protein
STRINGBo4g186920.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-101C2H2 family protein