PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635180.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 180aa    MW: 20513.6 Da    PI: 9.8606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294870123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+Fs+   L  H  +H
  XP_013635180.1 48 FECKTCNKRFSSFQALGGHRASH 70
                    89**********99999998887 PP
2zf-C2H216.52.4e-0595117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+sF +   L  H+r+H
  XP_013635180.1  95 HECTICGQSFGTGQALGGHMRRH 117
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.27E-847117No hitNo description
PfamPF139121.5E-124772IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5334875IPR007087Zinc finger, C2H2
SMARTSM003550.0934870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4595122IPR007087Zinc finger, C2H2
SMARTSM003550.0195117IPR015880Zinc finger, C2H2-like
PfamPF139128.9E-1295119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKRERSEFEE SIKMSDDIAR CLMILSQTSM VKQVDVNQYT ERNTSNRFEC KTCNKRFSSF  60
QALGGHRASH KKPKLSVEQK EVKHVTNNYN GTHMHECTIC GQSFGTGQAL GGHMRRHRSS  120
MKVEPSQLIS PVISNVPVLK RCSSSKRVLS LDLNLTPLEN DLETIFGKTF FPNIDMKFVV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635180.11e-133PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD41e-104ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0D3BR811e-131A0A0D3BR81_BRAOL; Uncharacterized protein
STRINGBo4g030570.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-106C2H2 family protein