PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635168.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 199aa    MW: 22535.1 Da    PI: 6.6367
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.8e-3871071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC  +Cv+apyf+++q +++fa++h++FGasn +kll++lp e+r +a+ +++yeA+ar++dP++G+v++i++lqqq+ +l+a+l
  XP_013635168.1   7 PCGACKFLRRKCIYGCVFAPYFCHDQgASHFAAIHQVFGASNASKLLSKLPMEDRCEAAITIYYEAQARLQDPIHGCVAHIFSLQQQVVNLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     + lk++
  XP_013635168.1 102 EILKQQ 107
                     **9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.796108IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-357105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSKLPMED  60
RCEAAITIYY EAQARLQDPI HGCVAHIFSL QQQVVNLQAQ LEILKQQATE SMMTTDTPSL  120
ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSLDTESDSD LRNIMTSYSE LDQHLNTFNQ  180
YHNGGNDVLS ASFGYISYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3431027105LOB family transfactor Ramosa2.1
5ly0_B8e-3431027105LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635168.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738481e-136AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635168.11e-149PREDICTED: LOB domain-containing protein 17
SwissprotQ9SLB64e-98LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A0D3C5T91e-148A0A0D3C5T9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D0481e-148A0A3P6D048_BRAOL; Uncharacterized protein
STRINGBo4g191540.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-90LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]