PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635109.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 256aa    MW: 28159.2 Da    PI: 8.036
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-18171205135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_013635109.1 171 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 205
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.8E-862256IPR016679Transcription factor, GATA, plant
SMARTSM004015.4E-15165215IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-14169229No hitNo description
PROSITE profilePS5011411.187169201IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13169203IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.44E-14170217No hitNo description
PfamPF003202.9E-16171205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDVYGLSSQD LLRVDDLLDF SNEDIFSASS STSTAAPSSS SFPPQNPNYH HHLPSSADHS  60
FLHDICVPSD DAAHLEWLSQ FVDDSFADFP ANPLGGTMTS VKTETSFTGK PTSKRSKPPA  120
ALVGTWAPMS EPDQNIHVTG RSKPKKEHSN GGGRHQSSSA ETAEGAGLRR CTHCASDKTP  180
QWRTGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFVLT QHSNSHRKVM ELRRQKEVMR  240
QPHQVQLHHH HHHPSF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635109.10.0PREDICTED: GATA transcription factor 2-like
SwissprotO497411e-126GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A0D3C6B90.0A0A0D3C6B9_BRAOL; GATA transcription factor
STRINGBo4g195320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-124GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]