PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635043.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 313aa    MW: 34669.4 Da    PI: 5.4221
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.1e-085393842
        zf-B_box  8 eHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     +e+ ++ + C+ +   lC  C  e+H+       H++vp+
  XP_013635043.1 53 SCESAPAAFLCKADAASLCTACDAEIHSAnplasrHQRVPI 93
                    7**************************66999999**9997 PP
2CCT65.91.2e-22244286143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae RpR+KGrF+k+
  XP_013635043.1 244 REARVLRYREKKKRRKFEKTIRYASRKAYAEVRPRIKGRFAKR 286
                     9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.81045IPR000315B-box-type zinc finger
CDDcd000217.26E-51349No hitNo description
SMARTSM003361.0E-124693IPR000315B-box-type zinc finger
PROSITE profilePS501199.574693IPR000315B-box-type zinc finger
CDDcd000211.05E-75293No hitNo description
PfamPF006431.1E-55393IPR000315B-box-type zinc finger
PROSITE profilePS5101716.42244286IPR010402CCT domain
PfamPF062032.4E-16244286IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLKEESNESY ATRACDTCRS AACTVYREAD STYLCTNCDA RVHAAKRVRV GDSCESAPAA  60
FLCKADAASL CTACDAEIHS ANPLASRHQR VPISANSCGY MATDADNNDM LVGDEDEVAS  120
WLMVNPGKNN NNGFLFGVEY LDLVDYSSGT DNQLEDQYSQ YQRSLGGGED GVVPLQVEES  180
TSHMQQSQHN FHLSGCSTEA HYNYISVVPE STSSDTTVQH AKEAIDQASG PPTQMVQQLN  240
PADREARVLR YREKKKRRKF EKTIRYASRK AYAEVRPRIK GRFAKRIDME ADAEQLFSTS  300
LMSNTSYGIV PSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257KKKRR
2253258KKKRRK
3254258KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635043.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4964420.0AY496442.1 Brassica rapa cultivar Kwonsim Col-2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635043.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-160COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A0D3AG150.0A0A0D3AG15_BRAOL; Uncharacterized protein
STRINGBo1g157390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-149CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]