PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634969.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 203aa    MW: 22268.1 Da    PI: 4.8306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79e-162573355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  XP_013634969.1 25 YRGARMRS-WGKWVSEIREPRK---KSRIWLGSFPTAEMAARAHDVAALSIKG 73
                    89999888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-302482IPR001471AP2/ERF domain
PROSITE profilePS5103222.8132481IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-202482IPR016177DNA-binding domain
SMARTSM003803.8E-362487IPR001471AP2/ERF domain
PfamPF008471.0E-92473IPR001471AP2/ERF domain
PRINTSPR003671.1E-92536IPR001471AP2/ERF domain
CDDcd000181.41E-312583No hitNo description
PRINTSPR003671.1E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVASHGEDTE SSSTKKKKET SAVVYRGARM RSWGKWVSEI REPRKKSRIW LGSFPTAEMA  60
ARAHDVAALS IKGSSAILNF PELTNSLPRP VSLSPADIQA AATKAAFMEF KTPSLHLEDQ  120
TPSQTRCETE TSGKASSSPT TSTLSEELGE IVELPTLDNE LSKDLALFDS LEGLVGMPPW  180
LDSYGEDPVL FDPLFQESLL WNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1825851576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen. {ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634969.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634969.11e-147PREDICTED: ethylene-responsive transcription factor ERF042
SwissprotQ52QU13e-86ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLA0A0D3C2461e-145A0A0D3C246_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C4791e-145A0A3P6C479_BRAOL; Uncharacterized protein
STRINGBo4g158810.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.14e-80ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]