PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634792.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 240aa    MW: 27287.8 Da    PI: 10.007
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.13.4e-17170218554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     +r++r++kNRe+A rsR+RK+a++ eLe kv +Le+eN++L+ +l+e +k
  XP_013634792.1 170 RRQKRMIKNRESAARSRARKQAYTHELEIKVSSLEEENEKLR-RLKEVEK 218
                     79***************************************9.8887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-15163212No hitNo description
SMARTSM003389.7E-10165222IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174168212IPR004827Basic-leucine zipper domain
CDDcd147074.59E-21170215No hitNo description
PfamPF001706.3E-14170212IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-10170212No hitNo description
PROSITE patternPS000360173188IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGSLRGNVEE PISQSLPRQN SLYSLKLHEV QNHLGSSAKP LGSMNFDELL KNVWSAEATN  60
QPREATEAGL SRQGSLALPR GLSKKTVEEV WREIQHDKNG SSGNPHASNE PWVQYHHPQH  120
QQQGFMPYPV CEMQEMVSPM NMMMGDAPQA HGRKRVAPSG GDIVERVVER RQKRMIKNRE  180
SAARSRARKQ AYTHELEIKV SSLEEENEKL RRLKEVEKIL PSEPPPDPKW KLRRTSSASF
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634792.11e-177PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2
SwissprotQ9C5Q21e-114AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A0D3BP081e-157A0A0D3BP08_BRAOL; Uncharacterized protein
STRINGBo4g012940.11e-158(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-103bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]