PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24181.1 Da PI: 9.2935 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.1e-20 | 71 | 120 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp + + +r++lg+f taeeAa a+++a+ +++g+ XP_013634770.1 71 YRGVRQRP-WGKYAAEIRDP---N-KaARVWLGTFNTAEEAALAYDKAAFEFRGH 120 9*******.**********9...3.35*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.723 | 70 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-33 | 70 | 129 | No hit | No description |
SMART | SM00380 | 9.5E-37 | 70 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 70 | 128 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 70 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 70 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MMPSGRRPLS PESMARKREE KEDLYCCTTL SESDVSAFVS ELTDQPTPPS MDSSSSSLTP 60 REQRNSRQRN YRGVRQRPWG KYAAEIRDPN KAARVWLGTF NTAEEAALAY DKAAFEFRGH 120 KAKLNFPEHI LINSTHRYPS TATSHDPIIV TPVPPVAPDI LLDQYGKYLS ENSYSSAANL 180 SMTISASSSS LSQQGNIPKL EDSESVKNMS IHKRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-25 | 69 | 127 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-25 | 66 | 127 | 1 | 63 | ATERF1 |
3gcc_A | 1e-25 | 66 | 127 | 1 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189292 | 0.0 | AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634770.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor ERF112-like | ||||
Swissprot | P93007 | 7e-97 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A0D3C3Z6 | 1e-159 | A0A0D3C3Z6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CW51 | 1e-159 | A0A3P6CW51_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g182140.1 | 1e-160 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-77 | ERF family protein |