PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 27997.8 Da PI: 4.8624 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.6e-20 | 73 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p++ +g +kr +lg+f+ta eAa a+++a+ +++g XP_013634722.1 73 CRFRGVRQRV-WGKWVAEIREPVNqRGgNSKRLWLGTFDTASEAALAYDRAASAMYG 128 689*****99.**********888777677**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-13 | 73 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.11E-27 | 73 | 137 | No hit | No description |
PROSITE profile | PS51032 | 22.155 | 74 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-20 | 74 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-32 | 74 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-28 | 74 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-10 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-10 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEKEDNGPNQ SSSASIEPSR RRRRVAEPVD TTLSRWVKEE EEEEGLKRTR RVQAKGSRKG 60 CMRGKGGPEN PVCRFRGVRQ RVWGKWVAEI REPVNQRGGN SKRLWLGTFD TASEAALAYD 120 RAASAMYGRY ARLNFPDGLG NGQDDEMKKT DEAESSRSYW LETYNVSETG NSVVDKKDGE 180 DYLYEDCIEL GQEKIENLGR MADNEIVKSE EDYMFDGFEY GLLYNESGYY HGGGFDPYLE 240 HFRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 75 | 143 | 6 | 70 | ATERF1 |
3gcc_A | 2e-17 | 75 | 143 | 6 | 70 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem tissues, stigma, anthers and region where sepals and petals attach the peduncle. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00298 | DAP | Transfer from AT2G38340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634722.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634722.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2E | ||||
Refseq | XP_013704026.1 | 0.0 | dehydration-responsive element-binding protein 2E-like | ||||
Refseq | XP_013705373.1 | 0.0 | dehydration-responsive element-binding protein 2E-like | ||||
Swissprot | O80917 | 3e-89 | DRE2E_ARATH; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | A0A078JZV8 | 1e-179 | A0A078JZV8_BRANA; BnaCnng75020D protein | ||||
TrEMBL | A0A0D3BQW9 | 1e-179 | A0A0D3BQW9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6TUG6 | 1e-179 | A0A3N6TUG6_BRACR; Uncharacterized protein | ||||
STRING | Bo4g027470.1 | 1e-180 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14249 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 5e-89 | ERF family protein |
Publications ? help Back to Top | |||
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