PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 417aa MW: 44806.3 Da PI: 5.1284 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 3.1e-31 | 208 | 266 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ XP_013634621.1 208 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 266 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 201 | 268 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.361 | 202 | 268 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-26 | 205 | 268 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-38 | 207 | 267 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 209 | 266 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MCSVSESLDM DNFQGDLTDV VRGIGSGHVS SSTGPSEGPS PSSLSPPPIS DVPSVASCQI 60 NPFGDPFVSM TDPLFNLTAN KSNNSFEVFP EVSEDDHIKS KCSVFPRIQI SQSNIIQDAS 120 KCSSQAMAVS SAVAAASPWG MINVVGTNSP RNCSMVDNNN NTSSSSQIQI SSPRNLGIKK 180 RKGQGKKVVC IPAPAAINSR SSGEVVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP 240 ARKQVERSRT DPNMLVITYT SEHNHPWPTQ RNALAGSTRS SISSSSNPSS KSLTSIATAI 300 TSSSSRVSQN KDEPNKSHLA SSSTPPSPYV AATVKEEDVE KGENKMEFDN DVDDTYRPEF 360 QHQPEGFFAD LDELEEDSLT MLLSQGFSSG GGGNLENKTT IPDVFSDFFD DDSSRSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-25 | 186 | 269 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-25 | 186 | 269 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 181 | PRNLGIKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634621.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ012167 | 0.0 | FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634621.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 | ||||
Swissprot | O64747 | 0.0 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A0D3BS06 | 0.0 | A0A0D3BS06_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g039260.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-164 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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