PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634613.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 407aa    MW: 45602.4 Da    PI: 9.2703
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634613.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.8e-3280133255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH rF++ave+LGG+++AtPk +l+lm+vkgL ++hvkSHLQ+YR+
  XP_013634613.1  80 PRLRWTPELHLRFLQAVEKLGGPDRATPKLVLQLMNVKGLCIAHVKSHLQMYRS 133
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.33576136IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-3076134IPR009057Homeodomain-like
SuperFamilySSF466891.16E-1577135IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-2480135IPR006447Myb domain, plants
PfamPF002492.1E-1081132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MRSSSQSSEN SKTCPSNNFK ATTKKEDNKD DENKDEEARS VDQSPSNNSY VEESGSHHHN  60
NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVEKLG GPDRATPKLV LQLMNVKGLC  120
IAHVKSHLQM YRSKKTDDPN QGNQGFSFEH GAGYTYNLGQ LPMLQSFDQR PSTSLGYGGG  180
SWTDHRRQVY RSPWRGLTAR DSTRTRPTLF SSQSGERFRE VSNSILDDTN KTISFRINSH  240
EAARASNGVG ESVPSIHRSF LEGMKTLSKS WGQSLSSNPN SSTASGPQDH IDTILSSNQR  300
ENPRVAEETE NVLKRKKLLL SDDCNKSVQD LDLSLSLKVH RTHNNLGDCL IEDEEKELDD  360
HEDIKGLSLS LSSSSSSKLG RDIRKEVQND PKKRKISVLV SPLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634613.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634613.10.0PREDICTED: uncharacterized protein LOC106340283 isoform X2
TrEMBLA0A0D3BQA80.0A0A0D3BQA8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BI710.0A0A3P6BI71_BRAOL; Uncharacterized protein
STRINGBo4g025360.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein