PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 408aa MW: 45604.4 Da PI: 9.0663 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.8 | 2.8e-29 | 80 | 134 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsek.AtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+LGG++ AtPk +l+lm+vkgL ++hvkSHLQ+YR+ XP_013634612.1 80 PRLRWTPELHLRFLQAVEKLGGPDTgATPKLVLQLMNVKGLCIAHVKSHLQMYRS 134 8**********************9669***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.054 | 76 | 137 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-28 | 76 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-14 | 77 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-21 | 80 | 136 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-10 | 81 | 133 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MRSSSQSSEN SKTCPSNNFK ATTKKEDNKD DENKDEEARS VDQSPSNNSY VEESGSHHHN 60 NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVEKLG GPDTGATPKL VLQLMNVKGL 120 CIAHVKSHLQ MYRSKKTDDP NQGNQGFSFE HGAGYTYNLG QLPMLQSFDQ RPSTSLGYGG 180 GSWTDHRRQV YRSPWRGLTA RDSTRTRPTL FSSQSGERFR EVSNSILDDT NKTISFRINS 240 HEAARASNGV GESVPSIHRS FLEGMKTLSK SWGQSLSSNP NSSTASGPQD HIDTILSSNQ 300 RENPRVAEET ENVLKRKKLL LSDDCNKSVQ DLDLSLSLKV HRTHNNLGDC LIEDEEKELD 360 DHEDIKGLSL SLSSSSSSKL GRDIRKEVQN DPKKRKISVL VSPLDLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-14 | 81 | 136 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-14 | 81 | 136 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-14 | 81 | 136 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-14 | 81 | 136 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634612.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634612.1 | 0.0 | PREDICTED: uncharacterized protein LOC106340283 isoform X1 | ||||
TrEMBL | A0A0D3BQA8 | 0.0 | A0A0D3BQA8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BI71 | 0.0 | A0A3P6BI71_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g025360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 0.0 | G2-like family protein |