PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634583.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 248aa    MW: 27142.8 Da    PI: 9.3148
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like962.9e-30102155155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_013634583.1 102 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 155
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.1999158IPR017930Myb domain
SuperFamilySSF466891.0E-1999159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30101160IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-24103155IPR006447Myb domain, plants
PfamPF002496.7E-7105154IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MREETPNWLI RCEEELPSPE ELIPISQTLI TPHLALAFQI GSHNNIHSSP KRTAAMYHQK  60
LQPAATPSPT MMNTDFGGDS STDLGSGGGG GGGDEPARTL KRPRLVWTPQ LHKRFVDAVG  120
HLGIKNAVPK TIMQLMSVEG LTRENVASHL QKYRLYLRRM QGGNGNGVSG GHVIVSDSAT  180
DRLFASSPVP AHLLSHEYLM PSPLMNPYLG KHVVTQQNHV VRNLRYEDSE YGNGDGGRKV  240
LKLFPAGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-32102158157Transcription factor LUX
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634583.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634583.10.0PREDICTED: transcription factor PCL1
RefseqXP_013691058.10.0transcription factor MYBC1
SwissprotO222101e-119MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A078IWA70.0A0A078IWA7_BRANA; BnaC04g52240D protein
TrEMBLA0A0D3BP030.0A0A0D3BP03_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C6R60.0A0A3P6C6R6_BRAOL; Uncharacterized protein
STRINGBo4g012890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40970.11e-107G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]