PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23888.5 Da PI: 8.4579 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 2.9e-21 | 69 | 117 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp + + +r++lg+f+taeeAa a+++a+ +++g XP_013634567.1 69 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRG 117 9*******.**********9...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-36 | 68 | 127 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.8E-34 | 68 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.04 | 68 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-23 | 68 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-15 | 68 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-39 | 68 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MHSGKRPLSP ESMAGKREEK EELGSCSTLS ESDVSAFVSE LTDQPTPPSV NQPSSLTLQE 60 QSNTRQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT AEEAALAYDK AAFEFRGQKA 120 KLNFPEHILT NSSGPYGPYP STATSHDRIT VMPSPAIAPD ILLDQYGQFH SANIDSVANF 180 SLTMSSSSSS LNQQEHIPKV EDGKSVKNVS IHKRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-26 | 67 | 125 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00289 | DAP | Transfer from AT2G33710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634567.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY136456 | 1e-115 | AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. | |||
GenBank | BT000236 | 1e-115 | BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634567.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor ERF112-like | ||||
Refseq | XP_013748505.1 | 1e-161 | ethylene-responsive transcription factor ERF112 | ||||
Swissprot | P93007 | 5e-97 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A078GS28 | 1e-160 | A0A078GS28_BRANA; BnaCnng05370D protein | ||||
TrEMBL | A0A0D3BSD6 | 1e-160 | A0A0D3BSD6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6C041 | 1e-160 | A0A3P6C041_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g043530.1 | 1e-160 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 3e-86 | ERF family protein |