PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634563.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 415aa    MW: 45283 Da    PI: 6.1736
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993.1e-31210268259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  XP_013634563.1 210 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 268
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31203270IPR003657WRKY domain
PROSITE profilePS5081133.361204270IPR003657WRKY domain
SuperFamilySSF1182901.03E-26207270IPR003657WRKY domain
SMARTSM007741.5E-38209269IPR003657WRKY domain
PfamPF031063.6E-26211268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDNFQGDLTD VVRGIRSGHM TSSPGPPEGP SPSSLSPPPT SDFHVDFPSV ANSQMNPFGD  60
PFVSMTDPLL SLPANFSGAG DIKNNNSFAV FPNITVDDHV KNQCSVFPRI RISQRNIIQD  120
ASKCNSPAMA TSSVAAASPW GMINVDSANS PRNCLLVDNN NITSSSSQIQ ISSPPQNFSI  180
KRRKGQGKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  240
CPARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSSSSSSSNP CSKSATATTS  300
VSSRVSQNKE EPNKSHMPFS STPPSPYVAR AVKEEDVEER KYNMEFDDVD DTYRPDFQHQ  360
PGDFFADLDD LEEDSLTMLL SQGFSGDNCG GGNLDNKRMI PDVFSDFFDD DSPRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-24188271680Disease resistance protein RRS1
5w3x_D2e-24188271680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931470.0KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634561.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
RefseqXP_013634562.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
RefseqXP_013634563.10.0PREDICTED: probable WRKY transcription factor 35 isoform X2
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A0A7RI830.0A0A0A7RI83_BRAOC; WRKY53 protein
TrEMBLA0A0D3C4760.0A0A0D3C476_BRAOL; Uncharacterized protein
STRINGBo4g182940.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-155WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]