PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 424aa MW: 46269.1 Da PI: 5.6765 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.2e-31 | 219 | 277 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ XP_013634562.1 219 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 277 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 212 | 279 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.361 | 213 | 279 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-26 | 216 | 279 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-38 | 218 | 278 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-26 | 220 | 277 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MCSVFESSDM DNFQGDLTDV VRGIRSGHMT SSPGPPEGPS PSSLSPPPTS DFHVDFPSVA 60 NSQMNPFGDP FVSMTDPLLS LPANFSGAGD IKNNNSFAVF PNITVDDHVK NQCSVFPRIR 120 ISQRNIIQDA SKCNSPAMAT SSVAAASPWG MINVDSANSP RNCLLVDNNN ITSSSSQIQI 180 SSPPQNFSIK RRKGQGKKVV CIPAPAAMNS RSSGEVVPSD LWAWRKYGQK PIKGSPYPRG 240 YYRCSSSKGC PARKQVERSR TDPNMLVITY TSEHNHPWPT QRNALAGSTR SSSSSSSNPC 300 SKSATATTSV SSRVSQNKEE PNKSHMPFSS TPPSPYVARA VKEEDVEERK YNMEFDDVDD 360 TYRPDFQHQP GDFFADLDDL EEDSLTMLLS QGFSGDNCGG GNLDNKRMIP DVFSDFFDDD 420 SPRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-24 | 197 | 280 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-24 | 197 | 280 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634562.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593147 | 0.0 | KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634561.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 isoform X1 | ||||
Refseq | XP_013634562.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 isoform X1 | ||||
Swissprot | O64747 | 0.0 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A0A7RI83 | 0.0 | A0A0A7RI83_BRAOC; WRKY53 protein | ||||
TrEMBL | A0A0D3C476 | 0.0 | A0A0D3C476_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g182940.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-155 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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