PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634554.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 397aa    MW: 44818.7 Da    PI: 9.7572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19240290256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  XP_013634554.1 240 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEQAAMAYDTAADILRGE 290
                     59******9.**********955...5**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-31239299No hitNo description
Gene3DG3DSA:3.30.730.103.1E-31240299IPR001471AP2/ERF domain
SMARTSM003804.8E-35240303IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22240298IPR016177DNA-binding domain
PROSITE profilePS5103222.326240297IPR001471AP2/ERF domain
PRINTSPR003673.4E-11241252IPR001471AP2/ERF domain
PfamPF008479.8E-13241289IPR001471AP2/ERF domain
PRINTSPR003673.4E-11263279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MITPIHTXTH SIVVHSMCIY KHLFCKPLTX LRFIFSGQNP QSDKTRLNME DQFPKLEPRF  60
MHEKLLSSGL YGFLSSSTPP QLLGVPIILE GMISPTLSSS QSYMASLHEL TSSIHHQQSP  120
VASVPWNFLD SFPQSQRPDD IHHPSKPPNL SLFLKEPKLL ELSQSNSNMM PYHNYTPNSL  180
HHESDQTRSD QWVDINKALT NYPSKGFGNY WLSTTKTQPM KLASGTRTRK VVQTTTPTKL  240
YRGVRQRHWG KWVAEIRLPR NRTRVWLGTF DTAEQAAMAY DTAADILRGE YAHLNFPDQK  300
HQLKSGPLRC MIASLLDSKI QQISASSQVI SSGNSPSPSS PKVGTSELKN NIKTESGEVV  360
MMKKQKINKE VMEGDGVQLS RMPSLDMDLI WDALSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19239297160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19239297463ATERF1
3gcc_A1e-19239297463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634554.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A0D3BYY40.0A0A0D3BYY4_BRAOL; Uncharacterized protein
STRINGBo4g130860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-178ERF family protein