PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 192aa MW: 22088.1 Da PI: 10.7606 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.1 | 2.6e-25 | 100 | 153 | 3 | 56 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 r++W++eLH r +a++++GGs++AtPk+i+++mkv+gLt+++vkS LQkYR++ XP_013634524.1 100 RRKWSEELHWRITDALQKIGGSQVATPKQIRDIMKVDGLTNDEVKSQLQKYRMH 153 99**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 96 | 156 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-12 | 96 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.1E-20 | 100 | 153 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MLLMNEAIER LKQEASSVQG VELKTDNKKN WMSSSQLWIS NSNSQSQSKR KRKQRGAIMS 60 FNRPPPPPPS APLSLPTSEI LTDYSSRIEQ SHPIQKKELR RKWSEELHWR ITDALQKIGG 120 SQVATPKQIR DIMKVDGLTN DEVKSQLQKY RMHIRKHPLH PTKNFSASDQ PRETQNLISL 180 SRSDSPQGPL DW |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634524.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634524.1 | 1e-138 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | F4JRB0 | 2e-65 | HHO5_ARATH; Transcription factor HHO5 | ||||
TrEMBL | A0A0D3BTD2 | 1e-136 | A0A0D3BTD2_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g053920.1 | 1e-137 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4922 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-55 | G2-like family protein |
Publications ? help Back to Top | |||
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