PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634207.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 273aa    MW: 30538.3 Da    PI: 7.8744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1892141255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdps+   r+r++lg+f+taeeAa  +++a+ +++g
  XP_013634207.1  92 KYRGVRRRP-WGKYAAEIRDPSK---RARVWLGTFDTAEEAAIGYDRAAIRIKG 141
                     8********.**********975...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.14292149IPR001471AP2/ERF domain
CDDcd000181.21E-3092147No hitNo description
SMARTSM003807.8E-3492155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-2892147IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2092148IPR016177DNA-binding domain
PfamPF008478.4E-1292141IPR001471AP2/ERF domain
PRINTSPR003671.5E-1093104IPR001471AP2/ERF domain
PRINTSPR003671.5E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKSRERNVKY TVHRKLTSLT NQPINGCPKV VKITVTDPCA TDSSSDEETD DRFVSPAKRV  60
KRYVEVIRFC DDNNKGASKR KKPTNKAAEP VKYRGVRRRP WGKYAAEIRD PSKRARVWLG  120
TFDTAEEAAI GYDRAAIRIK GRHALTNILT PPSSDDSAME ESRSSSIMRS PTSVLRFSGN  180
EETGPINLSS AHQEAPAGFA SPDPFFSPPE LFPARDCFWD SEIAPDPLFL DEFQLLPNSS  240
TVSKLSESFP LGVIGDLSSC SWDVDEFFKD HLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2193147358ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2193147661ATERF1
3gcc_A2e-2193147661ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634207.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634207.10.0PREDICTED: ethylene-responsive transcription factor CRF5
RefseqXP_013710172.10.0ethylene-responsive transcription factor CRF5
SwissprotO823393e-93CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLA0A078HU650.0A0A078HU65_BRANA; BnaC04g01080D protein
TrEMBLA0A0D3BNV10.0A0A0D3BNV1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C3E40.0A0A3P6C3E4_BRAOL; Uncharacterized protein
STRINGBo4g009400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.15e-84cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]