PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 350aa MW: 39950 Da PI: 6.4576 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.2 | 6.5e-32 | 69 | 122 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+ XP_013634096.1 69 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 122 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-29 | 65 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.273 | 65 | 125 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-14 | 67 | 123 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-22 | 69 | 124 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 70 | 121 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MIPSMDGSGK TTDREEEEEE EEEEEEEEED GEGEGEGEGE ESKVSSNTTV EAEVGKKTKV 60 RPYVRSKVPR LRWTPDLHLR FVRAVERLGG QERATPKLVR QMMNIKGLSI AHVKSHLQMY 120 RSKKMDDQGQ AIGDNRHFIE SSTDRNIYKL SQLPMFRGYN TNHSHDSPFR YGSRFSNASL 180 WNSSSHETNR SLIDRTCLIR GSSVSNNIHG SEYWTNNRSF PNTYSSSVSN HLPKLRHNHQ 240 ERTNLATFNS IQGHSRTFEK FETGIEERTN HVYCNKTTGK RNASTSLDLD LSLKVRVPEE 300 TTLEETETAT TTDQTLSLSL CSWKKSRVIK TDEEDRTVKI GQASTLDLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634096.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634096.1 | 0.0 | PREDICTED: putative two-component response regulator ARR20 | ||||
Refseq | XP_013705129.1 | 0.0 | myb family transcription factor PHL8-like | ||||
Refseq | XP_013705130.1 | 0.0 | myb family transcription factor PHL8-like | ||||
TrEMBL | A0A0D3BQY8 | 0.0 | A0A0D3BQY8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g029640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-171 | G2-like family protein |