PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 547aa MW: 59781.2 Da PI: 6.9268 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.9 | 1.6e-31 | 306 | 364 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg++fpr+YYrCt+a gCpv+k+v+rsaed +++++tYeg+Hnh+ XP_013634064.1 306 RDGCQWRKYGQKMAKGNPFPRAYYRCTMAtGCPVRKQVQRSAEDISILITTYEGNHNHP 364 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-33 | 290 | 366 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-27 | 299 | 366 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.4 | 300 | 366 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-38 | 305 | 365 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-27 | 307 | 364 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MDIGWSGLTL DSSSLDLVNP KRFKSNNTHR RFSTPLTMST TGDDVDDNKT NISNAASVRD 60 RQDNDLSSGV AGENDRAVPG EVDFFSDEKS RVCRDNVEDA GFRVKKEVQD DRTDVNTGLN 120 LRIRSDQSVT DDEESYEMEN KRAKNESIKL QDELKKVTIE NQKLRELLTQ ASNSYTSLQI 180 HIVSLMQQQQ KQQNKAIEAT ENHDETIVPR QFLDLVPSRA PGEAEVVSNS STEDRTRSGG 240 SSAAERRNNE VRDGKRLGRE ESPETESNKL QKVNNSSPTT FDQPAEAIMR KARVSVRASS 300 EAPMIRDGCQ WRKYGQKMAK GNPFPRAYYR CTMATGCPVR KQVQRSAEDI SILITTYEGN 360 HNHPLPPAAV AMASTTTAAA NMLLSGSMSS HDGMMNPTNL LARAVLPCST NMATISASAP 420 FPTVTLDLTH SPPPPNGSNS SPSTAAANNN NHHNSLMYPP QQQQMTNIPP GMLPHVIGQA 480 LYNQSKFSGL QFSGGSPSAA LSQPHAVANS IPALTTHPNF TAALAAVITS MINGSNHHDG 540 ERNNKNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-23 | 292 | 368 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634064.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634064.1 | 0.0 | PREDICTED: WRKY transcription factor 6 isoform X1 | ||||
Swissprot | Q9C519 | 0.0 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0D3BVN4 | 0.0 | A0A0D3BVN4_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g092630.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 0.0 | WRKY family protein |