PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28369.9 Da PI: 8.8109 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 6.1e-30 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+ XP_013634034.1 24 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 110.5 | 1.8e-36 | 97 | 186 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++RskKnell++++e++qk+e elq++n++Lr+++ XP_013634034.1 97 ITEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGINRVRSKKNELLVAELEYMQKREMELQHDNMYLRAQI 186 7899***********************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.071 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-38 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.27E-43 | 18 | 90 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-31 | 18 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.4E-27 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.952 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEEGGSSHDA ESNKKLVRGK IEIKRIENTT SRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VVFSTRGRLY EYANNSVKGT IERYKKACSD AVNPPTITEA NTQYYQQEAS KLRRQIRDIQ 120 NSNRHIVGES LGSLNFKELK NLEGRLEKGI NRVRSKKNEL LVAELEYMQK REMELQHDNM 180 YLRAQIGNCA RLDPEQQESS VIQGIAVYES GLSSHDQSQN YNRSYIPVNL LEPNQQFSGQ 240 DQPPLQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 7e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 7e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 7e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 7e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_B | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_I | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_J | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_A | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 8e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
6c9l_A | 8e-18 | 18 | 84 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-18 | 18 | 84 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-18 | 18 | 84 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-18 | 18 | 84 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-18 | 18 | 84 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-18 | 18 | 84 | 3 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634034.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ973084 | 0.0 | JQ973084.1 Brassica napus Shatterproof (SHP1a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634034.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL1 | ||||
Refseq | XP_013634035.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL1 | ||||
Swissprot | P29381 | 1e-170 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A0D3BX01 | 0.0 | A0A0D3BX01_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g108190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3341 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-172 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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