PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26585 Da PI: 4.8054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.2e-18 | 79 | 129 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+ aeeAa a+++a+ + +g XP_013633966.1 79 SYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDEAEEAALAYDQAAFATKG 129 69*******.**********44465..**********************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.45E-29 | 78 | 138 | No hit | No description |
Pfam | PF00847 | 6.9E-12 | 79 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-29 | 79 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.036 | 79 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 79 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-35 | 79 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSSSPSSWSS SQESFFWNES SLLDHSSDHP SFFCPNYNYS DDFFSFESPE PMIKEETQNG 60 DVSNSEEEEK IGTIDEGKSY RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF DEAEEAALAY 120 DQAAFATKGA LAVLNFPVEV VRESLKKMEN VNLQDGGSPI MALKRKHSLR NRPRGKKRSS 180 NSSSCSSNYS SYSSSSSTSG SSSSTSRSNE QSVVKQESGT LVVFEDLGAE YLEQLLMSSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 78 | 140 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-27 | 76 | 140 | 2 | 66 | ATERF1 |
3gcc_A | 2e-27 | 76 | 140 | 2 | 66 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.15301 | 1e-158 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633966.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX012389 | 0.0 | JX012389.1 Brassica napus isolate T0061 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633966.1 | 1e-176 | PREDICTED: ethylene-responsive transcription factor 15-like | ||||
Swissprot | Q8VYM0 | 1e-122 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A0D3BT87 | 1e-174 | A0A0D3BT87_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BWX4 | 1e-174 | A0A3P6BWX4_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g052480.1 | 1e-175 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3990 | 18 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 5e-98 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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