PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633932.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 413aa    MW: 46588.2 Da    PI: 7.1099
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.4e-3288141255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  XP_013633932.1  88 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 141
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-3084142IPR009057Homeodomain-like
PROSITE profilePS5129413.32184144IPR017930Myb domain
SuperFamilySSF466893.94E-1685143IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-2488143IPR006447Myb domain, plants
PfamPF002491.0E-989140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTPSSQSSEN SKTCPSNNFK ATTTKEDDDK DEEEEEEEEE DEEERSADQS PSSNSYVEES  60
GSQHHHNNND QIKKKGGSVR PYNRSKTPRL RWTPELHLCF LQAVERLGGP DRATPKLVLQ  120
LMNVKGLSIA HVKSHLQMYR SKKTDDLNQG DQGFSFEHGA GYTYNLSQLP MLQSFDQGPS  180
TSLGRYGGGS WIDHRRQVYR SPWRGLTARD NTRTRQTLFS SQLGERFLGV SNSILDDKNK  240
TISFRTNSRE AAHASNGIGE AVPRSHSSFL EGMKTFNKSW GQSFPSNPNP SMPSKRQDHT  300
AVTLNFHQSD NPRVGEETEN DLKRKRLLLS GDYNKSNQDL DLCLSLKVPP THNNLGECLL  360
EEGEKEHEDS KRLSLSLSSS SLSQHGRAIR KEDQNDHKKR KISVFASPLD LTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1789143357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633932.10.0PREDICTED: uncharacterized protein LOC106339633 isoform X1
TrEMBLA0A397ZQR00.0A0A397ZQR0_BRACM; Uncharacterized protein
STRINGBo4g188940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein