PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633906.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27967.3 Da    PI: 5.9409
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-182175256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ ++f++eq++ Le +Fe++  +  +++ +LA++l+L+ rqV +WFqN+Ra++k
  XP_013633906.1 21 KNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELSLQPRQVAIWFQNKRARWK 75
                    66789*************************************************9 PP
2HD-ZIP_I/II115.62.9e-3722113293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareL lqprqva+WFqn+RAR+k+kqlE++++ L ++y+ l+++ e+L+ke++ L +el++
  XP_013633906.1  22 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELSLQPRQVAIWFQNKRARWKSKQLETEFNILTQNYKDLASQFESLKKENQGLVSELDR 113
                     68************************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-171377IPR009057Homeodomain-like
SuperFamilySSF466895.99E-171579IPR009057Homeodomain-like
PROSITE profilePS5007117.4911777IPR001356Homeobox domain
SMARTSM003895.3E-152081IPR001356Homeobox domain
PfamPF000461.4E-152175IPR001356Homeobox domain
CDDcd000865.04E-142178No hitNo description
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PfamPF021832.3E-1377119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMSADPFMTM KKIKKSSHNE KNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELSLQP  60
RQVAIWFQNK RARWKSKQLE TEFNILTQNY KDLASQFESL KKENQGLVSE LDRLNEAMQK  120
KRVEGRECCG DQTVVALSIT DHESEKEENT KPEPEEVRPD MEVYEKGHHD DYGYNSHIKR  180
EYFGGFEEEA DHLMNIVEPA DSCLTSSVGW RGFKTNTNIL DQSSSNYPWW HFWSSTI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633906.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633906.11e-179PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468971e-128ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0D3C6L41e-178A0A0D3C6L4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CDP81e-178A0A3P6CDP8_BRAOL; Uncharacterized protein
STRINGBo4g197260.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-123homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]