PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013633897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 725aa MW: 82389 Da PI: 6.8231 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.1 | 8e-111 | 349 | 722 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cA+avs +d+++a+ lL +++++s++gd ++Rla+yf++ L+arla++++++y al++++ts ++ l+a+++++ v+P+ k++ XP_013633897.1 349 LRSLLLSCAQAVSVNDHRRAEGLLRLVRQHSSSYGDGTERLAHYFANSLEARLAGTGTQVYTALSSKKTS---AADMLKAYQTYVSVCPFKKIGI 440 689***************************************************************9999...9********************* PP GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + aN++I + v++ +++HiiDf+is+G+QW +L + La R++++ +lRiTg++ p+ g ++ + etg+rLak++++++vpfe+n+ +a+++ XP_013633897.1 441 VFANHTIQQLVKKTmpNTIHIIDFGISYGFQWHSLVHRLAWRRGSSCKLRITGIDLPQRGfrPANGVIETGHRLAKYCKKFNVPFEYNA-IAQKW 534 **************999*****************************************9999***************************.7**** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 e+++le+L++k+gE +aVn+ ++ +llde+v+++s+rd vL+l+++++P++++ + ++n++ F++rf e l+++s+lfd+ +++l re+ XP_013633897.1 535 ETIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVDSPRDVVLRLIQKIKPNIFIPSILSGSYNAPFFVTRFREVLYHFSSLFDMCDTTLTREDPM 629 *********************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r++ E+e+ grei+nvvaceg++r+er e++++W+ r+ +aGF+++p++++ +++ +l++ k + s+++ v+++ +++++gWk+r +++ S+W XP_013633897.1 630 RVVFEKEFYGREIMNVVACEGTARVERPESYKQWQGRMVRAGFRQLPVEKELVQKLRLMVDKEYkSKEFDVDQDGNWFLQGWKGRLVYASSFW 722 ************************************************************9998899************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.897 | 323 | 702 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-108 | 349 | 722 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 725 aa Download sequence Send to blast |
MGSYSAGFPG SFDNFHFNCK IDFSNLGNGL YLDDQPFLRS PSPFPPLPLP PLHPPPHPEP 60 YSQQNLHAAD ADADVDADDD CTDSVLQYIS QVLMEEDMDD KPCMFHDALS LQAAERSLYE 120 ALGEKYPDST SPIQLAHNPD ELSDITSSGY TSRTTTTTTT SSDWSFDSLE NSRPSWMQTS 180 IPKNFVFQST PSTRSSPTSG RNTGIRSSSS NDLVSNMFKD SSWALQFKKG VEEASKFLPK 240 STQLVIDVEN DHHYVPYRIT GEKCHWREDE HLPEERNKKQ SAVYADDPEL SEMFDKILLF 300 GDPKENPKCI LNETSQKEPP KASPSPKGET TTYPRGQKPT AYVKEIPDLR SLLLSCAQAV 360 SVNDHRRAEG LLRLVRQHSS SYGDGTERLA HYFANSLEAR LAGTGTQVYT ALSSKKTSAA 420 DMLKAYQTYV SVCPFKKIGI VFANHTIQQL VKKTMPNTIH IIDFGISYGF QWHSLVHRLA 480 WRRGSSCKLR ITGIDLPQRG FRPANGVIET GHRLAKYCKK FNVPFEYNAI AQKWETIKLE 540 DLKLKEGEFV AVNSLFRFRN LLDETVAVDS PRDVVLRLIQ KIKPNIFIPS ILSGSYNAPF 600 FVTRFREVLY HFSSLFDMCD TTLTREDPMR VVFEKEFYGR EIMNVVACEG TARVERPESY 660 KQWQGRMVRA GFRQLPVEKE LVQKLRLMVD KEYKSKEFDV DQDGNWFLQG WKGRLVYASS 720 FWVSV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-43 | 347 | 722 | 3 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013633897.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633897.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Refseq | XP_013633898.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A0D3C2S5 | 0.0 | A0A0D3C2S5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g168030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |