PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633836.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 287aa    MW: 30975.5 Da    PI: 7.4701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068118140123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  XP_013633836.1 118 YECKTCSRTFSSFQALGGHRASH 140
                     99**********99999998887 PP
2zf-C2H213.30.00024194216123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_013633836.1 194 HECSICGSEFTSGQALGGHMRRH 216
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.67E-8117140No hitNo description
PfamPF139121.8E-12117142IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.575118145IPR007087Zinc finger, C2H2
SMARTSM003550.13118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-8189216No hitNo description
Gene3DG3DSA:3.30.160.600.001192216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11193217IPR007087Zinc finger, C2H2
SMARTSM003550.019194216IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868194221IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMSQDHVGSD QTQIIKGKRT KRQRSSSSTF LVAAAAATTN TSSNSSAGDG GGGRAVSDEY  60
NSAVSSPVTT TDCTEEEEDM AICLIMLARG AALSPDLKNS RKADKTLSSA ENSSFFVYEC  120
KTCSRTFSSF QALGGHRASH KKPRVSIEEK TKLPLMQAKS SGSEEGQKYN FKVFGSSLAS  180
LSSNIIISKA NKVHECSICG SEFTSGQALG GHMRRHRTAT TAVIPVATTE VSRNSTEEET  240
ENLSSYIEQR KYLPLDLNLP APEDDLRESK FQGIVFSTTP ALIDCHY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633836.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633836.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X41e-148ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0D3C2I60.0A0A0D3C2I6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CTM20.0A0A3P6CTM2_BRAOL; Uncharacterized protein
STRINGBo4g165160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]