PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633749.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 408aa MW: 46657.1 Da PI: 4.3698 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 91.5 | 9.5e-29 | 75 | 169 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++ w+++De+++L ++d++++t+ s +d+dafy +vk+ i+ ++sk+ql++Kir+L k+f +++++ ++++ psf+ ++d+ if+ls +iW+ XP_013633749.1 75 NKMNWTKDDELIILGSIVDYEKETKLSHRSDWDAFYGYVKDFIEPDFSKKQLTDKIRNLNKRFLGNKARCDDEEGPSFTDTEDDIIFKLSVIIWD 169 5799******************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-22 | 77 | 169 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MKIRVFSLPQ PKFRSLIHRN QMALGKRTRD YDSNDKPISS SPLRRMQEDD ASGMESMLRR 60 RKQPKTTPVS SSSNNKMNWT KDDELIILGS IVDYEKETKL SHRSDWDAFY GYVKDFIEPD 120 FSKKQLTDKI RNLNKRFLGN KARCDDEEGP SFTDTEDDII FKLSVIIWDS TNETGCASDE 180 NVDQAKDVPC VENEPVDENM DPAKVDLPCV EDERVDENVD QAKALDLDKD APCVERERVN 240 ENMDLDQEKD VPCVEHELVN ENMDQEQAVL CTGDEPMSNA SIETDKGEKD GVDEFCALKD 300 ALTDKEEKEK STEDVGDELC AMKDALTDKE KSEDVYCALK DALEETTFFQ SIGKYQQKVL 360 LQNLKNLRGT RRKELADELK ELLNEEMKVR AKKLSLTAKL ASAWEESC |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of rosette leaves, in primary and secondary roots and at the base of flowers and siliques. {ECO:0000269|PubMed:18162594}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633749.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633749.1 | 0.0 | PREDICTED: uncharacterized protein LOC106339475 isoform X1 | ||||
Swissprot | Q9SJM4 | 2e-78 | STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3 | ||||
TrEMBL | A0A0D3C4K2 | 0.0 | A0A0D3C4K2_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g186180.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12440 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36340.1 | 3e-68 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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