PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633653.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 262aa    MW: 29206.2 Da    PI: 9.3167
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind65.42.5e-209881596
       GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalp 96
                    e++++l   +++++ms++aerda+++ern+a+s+k +a+a+rd a++qrdkalaer+kal+erdn+++al+++ensl++al+
  XP_013633653.1  9 EQHNALV--MNKKIMSILAERDAAVHERNQAVSAKMEALAARDQALQQRDKALAERDKALIERDNAFAALQHHENSLNFALS 88
                    4556677..99****************************************************************9986654 PP
2GAGA_bind2401.7e-73116262155301
       GAGA_bind 155 rakkpkekkak..kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
                     ++k  k+kk +  k kk +e+ +  v++++  ++ k+++++  ++ln v++De t+PvPvC+CtG+ +qCYkWGnGGWqS+CCtt++S+yPLP++
  XP_013633653.1 116 TTKAIKRKKDNkpKGKKVGEDLNLLVAAPG--KKCKKDWDTNHFGLNLVTFDEKTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTNLSQYPLPQM 208
                     333333344331144555777777788888..57************************************************************* PP

       GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +++r++R++grKmS+++f++lL++LaaeG dls  vDLkd+WA+HGtn+++ti+
  XP_013633653.1 209 PNKRHSRVGGRKMSGNVFSRLLSHLAAEGCDLSSHVDLKDYWARHGTNRYITIK 262
                     *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.5E-1121262IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-858262IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLPHHQIKEQ HNALVMNKKI MSILAERDAA VHERNQAVSA KMEALAARDQ ALQQRDKALA  60
ERDKALIERD NAFAALQHHE NSLNFALSGG KRCQGGDDDD VLFTIDDLCP TTSTNTTKAI  120
KRKKDNKPKG KKVGEDLNLL VAAPGKKCKK DWDTNHFGLN LVTFDEKTMP VPVCTCTGSA  180
HQCYKWGNGG WQSSCCTTNL SQYPLPQMPN KRHSRVGGRK MSGNVFSRLL SHLAAEGCDL  240
SSHVDLKDYW ARHGTNRYIT IK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633652.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
RefseqXP_013633653.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X2
RefseqXP_013716916.10.0protein BASIC PENTACYSTEINE4
RefseqXP_013716917.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-147BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0D3C0Y80.0A0A0D3C0Y8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CPR40.0A0A3P6CPR4_BRAOL; Uncharacterized protein
STRINGBo4g145820.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-131basic pentacysteine 4