PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 284aa MW: 31618.8 Da PI: 9.1033 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 66.8 | 9.4e-21 | 31 | 110 | 15 | 96 |
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalp 96 e++++l +++++ms++aerda+++ern+a+s+k +a+a+rd a++qrdkalaer+kal+erdn+++al+++ensl++al+ XP_013633652.1 31 EQHNALV--MNKKIMSILAERDAAVHERNQAVSAKMEALAARDQALQQRDKALAERDKALIERDNAFAALQHHENSLNFALS 110 2556666..99****************************************************************9986654 PP | |||||||
2 | GAGA_bind | 239.7 | 2.1e-73 | 138 | 284 | 155 | 301 |
GAGA_bind 155 rakkpkekkak..kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247 ++k k+kk + k kk +e+ + v++++ ++ k+++++ ++ln v++De t+PvPvC+CtG+ +qCYkWGnGGWqS+CCtt++S+yPLP++ XP_013633652.1 138 TTKAIKRKKDNkpKGKKVGEDLNLLVAAPG--KKCKKDWDTNHFGLNLVTFDEKTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTNLSQYPLPQM 230 333333344331144555777777788888..57************************************************************* PP GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++r++R++grKmS+++f++lL++LaaeG dls vDLkd+WA+HGtn+++ti+ XP_013633652.1 231 PNKRHSRVGGRKMSGNVFSRLLSHLAAEGCDLSSHVDLKDYWARHGTNRYITIK 284 *****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.0E-126 | 1 | 284 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.2E-86 | 18 | 284 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MENGGQYANG SDYLKGAHSM WNMLPHHQIK EQHNALVMNK KIMSILAERD AAVHERNQAV 60 SAKMEALAAR DQALQQRDKA LAERDKALIE RDNAFAALQH HENSLNFALS GGKRCQGGDD 120 DDVLFTIDDL CPTTSTNTTK AIKRKKDNKP KGKKVGEDLN LLVAAPGKKC KKDWDTNHFG 180 LNLVTFDEKT MPVPVCTCTG SAHQCYKWGN GGWQSSCCTT NLSQYPLPQM PNKRHSRVGG 240 RKMSGNVFSR LLSHLAAEGC DLSSHVDLKD YWARHGTNRY ITIK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633652.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633652.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1 | ||||
Refseq | XP_013716916.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_013716917.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
Swissprot | Q8S8C6 | 1e-159 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A0D3C0Y8 | 0.0 | A0A0D3C0Y8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CPR4 | 0.0 | A0A3P6CPR4_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g145820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4090 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-144 | basic pentacysteine 4 |