PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633565.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 676aa MW: 73590.5 Da PI: 6.9947

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	394	431	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_013633565.1 394 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 431 554459******************************88 PP
2	BELL	123.5	8.7e-40	253	324	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi XP_013633565.1 253 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKLYTSLALKTISRQFRCLKEAIAGQI 324 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.2E-78	173	322	IPR006563	POX domain
Pfam	PF07526	4.1E-47	179	321	IPR006563	POX domain
PROSITE profile	PS50071	12.26	372	435	IPR001356	Homeobox domain
CDD	cd00086	3.03E-12	375	436	No hit	No description
SMART	SM00389	2.3E-9	375	439	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	376	442	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-29	378	441	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	392	431	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MAAYFHGNPS EISAGTDGGL QTLILMNPTT YVQYTQQDDD SNNNNNSNNN ANNNNSFVFL 60 DSHAPPQNAS QQFVGIPLSG HEAASITAAD NISVLHGYPP RVQYSLYNSH QVDPTHQQAA 120 CETPRAQRGL SLSLSSQQQQ QQQQHQTLHH VGFGSGPGED IRVGPGSTGS GVTNGIANLV 180 SSKYLKAAQE LLDEVVNADS KDINTKSQLF SSKKGTSGTD NKAVGESSTG AGEGSGGGGE 240 ASGKRTVELG TAERQEIQMK KAKLSSMLHE VEQRYRQYHQ QMQMVISSFE QAAGIGSAKL 300 YTSLALKTIS RQFRCLKEAI AGQIKAANKS LGEEDSVSGV GRLEGSRLKF VDHHLRQQRA 360 LQQLGMIQHP SNNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKHML AKQTGLTRSQ 420 VSNWFINARV RLWKPMVEEM YTEEMKEQGK NMGSMEKTLN MDQNNEDSAS KSTSNQEKSP 480 MGGGGGADNY HMNPNHNGDL EGVTGMQGSP KRLRTSEETM MQPINADFSS NEKLTMKILE 540 ERQGLRSDGG YPFMGNFGQY QMDEMSRFEV AVSDQELLAQ RYSGNNNGVS LTLGLPHCDS 600 LSSTHHQGFM QTHHGIPIGR RVKIGEADDY GAAALNGGGG SAATVHSSAA AAAAYNGMNI 660 QNQKRYVAQL LPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MAAYFHGNPS EISAGTDGGL QTLILMNPTT YVQYTQQDDD SNNNNNSNNN ANNNNSFVFL  60
DSHAPPQNAS QQFVGIPLSG HEAASITAAD NISVLHGYPP RVQYSLYNSH QVDPTHQQAA  120
CETPRAQRGL SLSLSSQQQQ QQQQHQTLHH VGFGSGPGED IRVGPGSTGS GVTNGIANLV  180
SSKYLKAAQE LLDEVVNADS KDINTKSQLF SSKKGTSGTD NKAVGESSTG AGEGSGGGGE  240
ASGKRTVELG TAERQEIQMK KAKLSSMLHE VEQRYRQYHQ QMQMVISSFE QAAGIGSAKL  300
YTSLALKTIS RQFRCLKEAI AGQIKAANKS LGEEDSVSGV GRLEGSRLKF VDHHLRQQRA  360
LQQLGMIQHP SNNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKHML AKQTGLTRSQ  420
VSNWFINARV RLWKPMVEEM YTEEMKEQGK NMGSMEKTLN MDQNNEDSAS KSTSNQEKSP  480
MGGGGGADNY HMNPNHNGDL EGVTGMQGSP KRLRTSEETM MQPINADFSS NEKLTMKILE  540
ERQGLRSDGG YPFMGNFGQY QMDEMSRFEV AVSDQELLAQ RYSGNNNGVS LTLGLPHCDS  600
LSSTHHQGFM QTHHGIPIGR RVKIGEADDY GAAALNGGGG SAATVHSSAA AAAAYNGMNI  660
QNQKRYVAQL LPDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-17	381	438	1	58	Homeobox protein Meis1
4xrs_B	7e-17	381	438	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633565.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633564.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_013633565.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A0D3C4G6	0.0	A0A0D3C4G6_BRAOL; Uncharacterized protein
STRING	Bo4g185820.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	0.0	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]