PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633551.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 371aa MW: 40733.8 Da PI: 9.1469

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.6e-39	77	137	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ s XP_013633551.1 77 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGTLRNVPVGGSSRKNKRLS 137 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	76	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	79	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.873	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDATKWTQGF QEMMNIKPMD QIMIPNNNNT HQSTTTSSAR PSTILTPNGV SAAGATVSSV 60 SNNNNNTAVV VERKARPQEK LNCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGT 120 LRNVPVGGSS RKNKRLSSSS SSSNILQTTP SSLGLTTTLP DLNPPILFSN QIPNKSIGSS 180 QDLNLLSFPV MQDQHHRVHM SQFLHMPKME GNGNITHQQP SSSSSLYGSS PVSALELLRR 240 GVSVSPNSVM PSGPMMDSSN NVMYTSSGFP TMVDYKPSNL SFSTDHHQGT GHNNHNRSDD 300 ANHQGRVLFP FGDQMKERSS SITQEVDHDD NQQQNSHGNN NNNNNNNNIA SIPNNGYWSG 360 MFSTTGGGSS W

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDATKWTQGF QEMMNIKPMD QIMIPNNNNT HQSTTTSSAR PSTILTPNGV SAAGATVSSV  60
SNNNNNTAVV VERKARPQEK LNCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGT  120
LRNVPVGGSS RKNKRLSSSS SSSNILQTTP SSLGLTTTLP DLNPPILFSN QIPNKSIGSS  180
QDLNLLSFPV MQDQHHRVHM SQFLHMPKME GNGNITHQQP SSSSSLYGSS PVSALELLRR  240
GVSVSPNSVM PSGPMMDSSN NVMYTSSGFP TMVDYKPSNL SFSTDHHQGT GHNNHNRSDD  300
ANHQGRVLFP FGDQMKERSS SITQEVDHDD NQQQNSHGNN NNNNNNNNIA SIPNNGYWSG  360
MFSTTGGGSS W

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633551.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633551.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X1
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0D3BNS1	0.0	A0A0D3BNS1_BRAOL; Uncharacterized protein
STRING	Bo4g007120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-142	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]