PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 583aa    MW: 65667.6 Da    PI: 7.329
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.7e-23115216198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + + +
  XP_013633548.1 115 FVKILTASDTSTHGGFSVLRKHATEClpsldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGH-Q 206
                     89****************************9543..445569************************************************644.8 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++ l+v+v+r
  XP_013633548.1 207 TGDLRVGVRR 216
                     8889***998 PP

2Auxin_resp96.24.9e-32242321183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F v+Y+Pr   s+F+++v+k+++a+k+ + +GmRf+m+fe+e+s+er ++Gt+vg+ dl+p +Wp SkWr L+
  XP_013633548.1 242 ASHAFNTTTMFVVLYKPRI--SQFIISVNKYMAAMKKGFGIGMRFRMRFEGEESPERIFTGTIVGTGDLSP-QWPSSKWRFLQ 321
                     689***************8..9*************************************************.********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-39100245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-36109231IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-19114216No hitNo description
SMARTSM010198.2E-20115218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97115218IPR003340B3 DNA binding domain
PfamPF023622.9E-21115216IPR003340B3 DNA binding domain
PfamPF065076.3E-29242321IPR010525Auxin response factor
PfamPF023093.5E-8458508IPR033389AUX/IAA domain
SuperFamilySSF542772.94E-14465548No hitNo description
PROSITE profilePS5174528.648472564IPR000270PB1 domain
PfamPF023096.9E-7514557IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MESVVDDQLY MELWKACAGP LVEVPRYDER VFYFPQGHME QLVASTNQRV VDKDIPVFNL  60
PPKILCRVLN VMLKAEHETD EVYAQITLQP EEDQSEPTSL DPPVTEPAKQ TVDSFVKILT  120
ASDTSTHGGF SVLRKHATEC LPSLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL  180
TTGWSTFVTS KRLVAGDAFV FLRGHQTGDL RVGVRRLAKQ QSTMPASVIS SQSMHLGVLA  240
TASHAFNTTT MFVVLYKPRI SQFIISVNKY MAAMKKGFGI GMRFRMRFEG EESPERIFTG  300
TIVGTGDLSP QWPSSKWRFL QIQWDEPSTV QRPNKVSPWE IEPFLPSTLT TSPTQPHSKS  360
KRSRPIDSSV SEITGSPGAS NFLSRFPKSH EPSPSLKLLF QDPSSERNSN KTEAPATSCC  420
RLFGFDLKSK PASAPNPPDK QLISVDSNNS GSTKCQDPNS SKDQKRQTSS TRSRTKVQMQ  480
GTAVGRAVDL TLLRSYDELI SELEKMFEIE GELRSKDKWA IVFTDDEGDM MLVGDDPWDE  540
FCKMAKKLFI YSSDEVKKMS SKSLLDDECT MVQLEPDQRT VKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-161434414355Auxin response factor 1
4ldw_A1e-161434414355Auxin response factor 1
4ldw_B1e-161434414355Auxin response factor 1
4ldx_A1e-161434414355Auxin response factor 1
4ldx_B1e-161434414355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794760.0JN979476.1 Brassica rapa subsp. pekinensis auxin response factor 11 (ARF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633548.10.0PREDICTED: auxin response factor 11
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A0D3BNS50.0A0A0D3BNS5_BRAOL; Auxin response factor
STRINGBo4g008150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74351841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]