PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 583aa MW: 65667.6 Da PI: 7.329 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.7e-23 | 115 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + + + XP_013633548.1 115 FVKILTASDTSTHGGFSVLRKHATEClpsldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGH-Q 206 89****************************9543..445569************************************************644.8 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++ l+v+v+r XP_013633548.1 207 TGDLRVGVRR 216 8889***998 PP | |||||||
2 | Auxin_resp | 96.2 | 4.9e-32 | 242 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr s+F+++v+k+++a+k+ + +GmRf+m+fe+e+s+er ++Gt+vg+ dl+p +Wp SkWr L+ XP_013633548.1 242 ASHAFNTTTMFVVLYKPRI--SQFIISVNKYMAAMKKGFGIGMRFRMRFEGEESPERIFTGTIVGTGDLSP-QWPSSKWRFLQ 321 689***************8..9*************************************************.********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-39 | 100 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-36 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.44E-19 | 114 | 216 | No hit | No description |
SMART | SM01019 | 8.2E-20 | 115 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 115 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-21 | 115 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.3E-29 | 242 | 321 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.5E-8 | 458 | 508 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.94E-14 | 465 | 548 | No hit | No description |
PROSITE profile | PS51745 | 28.648 | 472 | 564 | IPR000270 | PB1 domain |
Pfam | PF02309 | 6.9E-7 | 514 | 557 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MESVVDDQLY MELWKACAGP LVEVPRYDER VFYFPQGHME QLVASTNQRV VDKDIPVFNL 60 PPKILCRVLN VMLKAEHETD EVYAQITLQP EEDQSEPTSL DPPVTEPAKQ TVDSFVKILT 120 ASDTSTHGGF SVLRKHATEC LPSLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL 180 TTGWSTFVTS KRLVAGDAFV FLRGHQTGDL RVGVRRLAKQ QSTMPASVIS SQSMHLGVLA 240 TASHAFNTTT MFVVLYKPRI SQFIISVNKY MAAMKKGFGI GMRFRMRFEG EESPERIFTG 300 TIVGTGDLSP QWPSSKWRFL QIQWDEPSTV QRPNKVSPWE IEPFLPSTLT TSPTQPHSKS 360 KRSRPIDSSV SEITGSPGAS NFLSRFPKSH EPSPSLKLLF QDPSSERNSN KTEAPATSCC 420 RLFGFDLKSK PASAPNPPDK QLISVDSNNS GSTKCQDPNS SKDQKRQTSS TRSRTKVQMQ 480 GTAVGRAVDL TLLRSYDELI SELEKMFEIE GELRSKDKWA IVFTDDEGDM MLVGDDPWDE 540 FCKMAKKLFI YSSDEVKKMS SKSLLDDECT MVQLEPDQRT VKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-161 | 4 | 344 | 14 | 355 | Auxin response factor 1 |
4ldw_A | 1e-161 | 4 | 344 | 14 | 355 | Auxin response factor 1 |
4ldw_B | 1e-161 | 4 | 344 | 14 | 355 | Auxin response factor 1 |
4ldx_A | 1e-161 | 4 | 344 | 14 | 355 | Auxin response factor 1 |
4ldx_B | 1e-161 | 4 | 344 | 14 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979476 | 0.0 | JN979476.1 Brassica rapa subsp. pekinensis auxin response factor 11 (ARF11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633548.1 | 0.0 | PREDICTED: auxin response factor 11 | ||||
Swissprot | Q9ZPY6 | 0.0 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | A0A0D3BNS5 | 0.0 | A0A0D3BNS5_BRAOL; Auxin response factor | ||||
STRING | Bo4g008150.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.1 | 0.0 | auxin response factor 11 |
Publications ? help Back to Top | |||
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