PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633512.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | DBB | ||||||||
Protein Properties | Length: 241aa MW: 26863.1 Da PI: 4.4865 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.2 | 1.4e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C ++ lC++C +e H H+ XP_013633512.1 4 QCDVCEKAPATLICCADEAALCASCDVEVHAAnklaskHQ 43 7*****************************6556666665 PP | |||||||
2 | zf-B_box | 27.2 | 8.2e-09 | 55 | 86 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ + ek + +fC +++ llC+dC +++H XP_013633512.1 55 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 86 68*****************************4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.456 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.28E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 7.0E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.9E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.343 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-6 | 55 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.21E-7 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MKIQCDVCEK APATLICCAD EAALCASCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC 60 LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT GIRVALSSTS CSQEVEMNHF 120 DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKK EPLDLGELDW LAEMGFFGDQ 180 PDQEALPAAE VPELSVSHLP HVHSYNRPMK SNVSNKKPRL EIRYDDDDDD DEQHFLVPDI 240 G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633512.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352961 | 0.0 | AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633512.1 | 1e-179 | PREDICTED: B-box zinc finger protein 25-like isoform X2 | ||||
Swissprot | Q9SID1 | 1e-153 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A397ZNG1 | 1e-172 | A0A397ZNG1_BRACM; Uncharacterized protein | ||||
STRING | Bra021734.1-P | 1e-168 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 1e-153 | salt tolerance homologue |
Publications ? help Back to Top | |||
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