PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633207.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 329aa    MW: 36694.9 Da    PI: 6.283
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.3e-09192238450
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      kr +r+ +NRe+A rs +RK   + eLe kv+ Le++ ++L   l+
  XP_013633207.1 192 PKRLKRRLSNRESAARSKERKALHQFELEVKVERLETQIDTLTAVLK 238
                     59*************************************99986554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-4189250IPR004827Basic-leucine zipper domain
PfamPF077166.8E-8190236IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.542191243IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-8193243No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-7193245No hitNo description
CDDcd147033.25E-9194245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MANKEMAYPP LPYTGGSGSS LPSSVFSVPP TYRDFPSATV ANNDMALPPI AYMMPNSSYA  60
EGSKAHKRAS SDSIRLNSLM ASNRIYPNPI DMPVGVRTQN ESVGDKSSSH NEDVNVDDPN  120
GNKRRAGNEI APPSRIWRSV SAGSSLNEAP SLPQGVSVDV GNDTAFGGMF TPEQLRKIAA  180
SDELKAMAAS DPKRLKRRLS NRESAARSKE RKALHQFELE VKVERLETQI DTLTAVLKLE  240
KRERMAERMA ADHECARLRT SLDGADEQAR VHHDLIEQLN GEVRRLTEEA RRLREEVSEY  300
RRRESEGMNA NMLEQLNINQ FQETDYSFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197PKRLKRR
2191198PKRLKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633207.10.0PREDICTED: transcription factor RF2b-like
TrEMBLA0A3P6CVJ30.0A0A3P6CVJ3_BRAOL; Uncharacterized protein
STRINGBra030312.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1940967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-27bZIP family protein