PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 182aa MW: 21157 Da PI: 8.2195 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 24 | 66 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eEd++lv+a+k +G++ W++Ia ++ gRt++ +k+rw+ XP_013633164.1 24 KSAWTEEEDQILVEAHKVFGNK-WAKIALKLC-GRTENAIKNRWN 66 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.18E-24 | 1 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.976 | 1 | 18 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 2 | 30 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.224 | 19 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 24 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-12 | 26 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 31 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MLGTRIGKQC RERWHNHLRH GIKKSAWTEE EDQILVEAHK VFGNKWAKIA LKLCGRTENA 60 IKNRWNGTKR RMRLMRMKKS DKNANPLQNA ILARYIRHVT NENESPNTKE TDCTKDDDRE 120 NAFDGEMDLS LDVTTQTTKP LAKMSTTSCY VPEPATTFSW DDYFTNICES MDDIQMLMQG 180 LD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 2 | 71 | 37 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633164.1 | 1e-136 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A078IJF2 | 1e-133 | A0A078IJF2_BRANA; BnaC04g32560D protein | ||||
TrEMBL | A0A0D3C075 | 1e-133 | A0A0D3C075_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CWL8 | 1e-133 | A0A3P6CWL8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g140220.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13303 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25230.1 | 1e-48 | myb domain protein 100 |