PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 332aa MW: 38358 Da PI: 6.4987 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63 | 3.3e-20 | 17 | 65 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g++++++ XP_013633151.1 17 SSSSYSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGEMRTWP 65 799*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.928 | 26 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-13 | 28 | 100 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-10 | 30 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MRSPRSSSCS KCSSSSSSSS YSLAATSLKS RLLTIFKKAQ ELTTLCDIEA CVIHYGPDGE 60 MRTWPENRDI VRSLALRYIQ LDQAKRRKKS VNLYEFLNKN KEKKKMIDNF KKAKRNVEEL 120 KYPISDHYTP DQINQLIHSL ELSYSKLQER RRFLAAKANL DDRQHSLNPN HFTKYPQESC 180 VYDQNNNNYN FQHLCLSDYS TLHYQLMPYG GSDQNMMCMV NNFQHPCVSS NTTDYSVFPL 240 ELQESVSNYE LNQLMPHELN YGFDQNMCMA DTTNSCNVED PCLSDDFCFD FQDPYSGFMV 300 GNPSFSHDFN PVMSSSYVDE NRLLQASTLP SL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633151.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633151.1 | 0.0 | PREDICTED: uncharacterized protein LOC106338804 | ||||
Swissprot | Q9FLL0 | 7e-59 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | A0A0D3C009 | 0.0 | A0A0D3C009_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CBF5 | 0.0 | A0A3P6CBF5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g139560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 5e-58 | AGAMOUS-like 75 |
Publications ? help Back to Top | |||
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