PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633124.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 225aa MW: 25808.6 Da PI: 8.2762 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 114 | 7.4e-36 | 59 | 162 | 2 | 98 |
NF-YC 2 lksfwekqiekatdfk..nhelPlarikkilkadedvk.....misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 lk+fw + ++ + f n lPl+r+kkilk+d++v+ +is +aP+l+skace++ileltlr+w+h ++++r+t++++d++ av++++++ XP_013633124.1 59 LKAFWDNLWNQLQYFTgfNCYLPLSRVKKILKTDPKVRgmitxKISRDAPALFSKACEYLILELTLRAWMHXQSCTRQTIQRCDVFHAVKNSETH 153 89******9999999888999****************8644446899************************************************ PP NF-YC 90 dflvdivpr 98 fl+d vp XP_013633124.1 154 CFLIDLVPF 162 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.72E-21 | 76 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-11 | 80 | 147 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.0E-24 | 80 | 161 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASEEDESWA PLGRQCCGPV LHMKLRALLL PKRSASGSFL CKCHELHETE ALSSLEAVLK 60 AFWDNLWNQL QYFTGFNCYL PLSRVKKILK TDPKVRGMIT XKISRDAPAL FSKACEYLIL 120 ELTLRAWMHX QSCTRQTIQR CDVFHAVKNS ETHCFLIDLV PFGPYCAMHH SIRLAILHVL 180 PPAKMILPDM NVANDMNQIK QENRIDKPFS DHKGFDLNSI SREFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 5e-21 | 58 | 161 | 18 | 118 | HapE |
4g92_C | 5e-21 | 58 | 161 | 18 | 118 | HapE |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633124.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633124.1 | 1e-167 | PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit C-10 | ||||
Swissprot | Q58CM8 | 1e-62 | NFYCA_ARATH; Nuclear transcription factor Y subunit C-10 | ||||
TrEMBL | A0A3N6Q3G1 | 1e-119 | A0A3N6Q3G1_BRACR; Uncharacterized protein | ||||
STRING | Bo4g136990.1 | 1e-93 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16422 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38140.1 | 6e-65 | nuclear factor Y, subunit C12 |
Publications ? help Back to Top | |||
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