PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 257aa MW: 29101.4 Da PI: 5.1744 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 86.2 | 4.2e-27 | 78 | 167 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 f rl+s++DeivlLqG+i + + +p d fy+ +k+s sf+v+ +q+ eKir+LKkK+++++ + g e s+ ++h+qk+f+lsk iWg XP_013633107.1 78 FTRLFSDKDEIVLLQGIIIDSEVK--NPLDYKRSFYQSMKGSFSFDVTLDQFKEKIRSLKKKYTRNEMR---GGEASLLNSHEQKCFQLSKAIWG 167 89***************9886665..599999***********************************99...9999******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.7E-24 | 78 | 167 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MANNLKHPLE DPPSSPCSSA GEKEIESEEE DQNLHTIISS EEDEPEDPPP RSGSKKDVCG 60 SSDQENLYAR WELLTPCFTR LFSDKDEIVL LQGIIIDSEV KNPLDYKRSF YQSMKGSFSF 120 DVTLDQFKEK IRSLKKKYTR NEMRGGEASL LNSHEQKCFQ LSKAIWGADG VAFESAISYN 180 NSQSKESERG LTKKRDLVTP RKGKNAQEAS KRGDTKKAPL VEKESDWGES SFFLGMDFLK 240 EKWTKVPPSG TKKETQE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633107.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633107.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A397ZJX8 | 1e-109 | A0A397ZJX8_BRACM; Uncharacterized protein | ||||
STRING | Bra028106.1-P | 1e-104 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13542 | 7 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66420.1 | 3e-25 | DNA-binding storekeeper protein-related transcriptional regulator |