PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633008.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 170aa MW: 19502.9 Da PI: 9.2374

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.4	1.8e-08	17	82	1	59
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkm.....rergferspkqCkekwenlnk 59 +Wt l+Li a ++ ++ +++++++ W++++++ erg +r+++qCk++w+++n XP_013633008.1 17 KWTVTDDLVLISAWLNTSKDPVvgNEQKAGAFWSRIAAYFaasptVERGAKREAIQCKQRWQKMND 82 69999999999998766665551166788999******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.097	10	81	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.9E-6	15	80	IPR009057	Homeodomain-like
Pfam	PF13837	5.1E-7	15	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MASFCEDSTT ERRERKKWTV TDDLVLISAW LNTSKDPVVG NEQKAGAFWS RIAAYFAASP 60 TVERGAKREA IQCKQRWQKM NDLVCKFCGS YAAATRQKTS GQNEADTVKL AHEIFYNDHK 120 IKFNLHHAWE ELRNDQKWCE VASRKIDGTS KKRKFDDGAQ SESSQATYLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633008.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633008.1	1e-125	PREDICTED: glutathione S-transferase T3-like
TrEMBL	A0A0D3BXV0	1e-116	A0A0D3BXV0_BRAOL; Uncharacterized protein
STRING	Bo4g117120.1	1e-117	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22	2	5