PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632513.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 207aa    MW: 23214.1 Da    PI: 8.2904
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.9e-18164200135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+  nC++++Tp+WR+gp g+ktLCnaCG+++rk+++
  XP_013632513.1 164 CTnmNCKAINTPMWRKGPLGPKTLCNACGIKFRKEKE 200
                     55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-6160207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-10161202No hitNo description
PfamPF003209.0E-16164200IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.4E-13167202IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.187168202IPR000679Zinc finger, GATA-type
CDDcd002026.62E-11168202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MENELDLTLR LSLPSPTVET HLSLNTLTTD QGNNFESNRR DNNDVGEIRG RRHILWNNDE  60
STNDHEGGRK NVDVNIQYYN LIFNHFAGVG ETLNFEPFPM QPSPAPVPET PTGSDYVLID  120
VPAKRAQRNS LTFKNAVDAH AILGRRWGCG GACTAGRINE MRKCTNMNCK AINTPMWRKG  180
PLGPKTLCNA CGIKFRKEKE KRCNGTE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632513.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632513.11e-154PREDICTED: GATA transcription factor 29
SwissprotQ9LT451e-44GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A0D3AC081e-135A0A0D3AC08_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GCU31e-135A0A3P6GCU3_BRAOL; Uncharacterized protein
STRINGBo1g108670.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.14e-47GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]