PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013632509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 23057.8 Da PI: 8.3225 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.1e-09 | 56 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg........kgRtlkqcksrwqk 46 r W++ +d l+dav + Wk+Ia++ + ++R + qck+rwqk XP_013632509.1 56 RRTWSPTDDVVLIDAVVGNEQRsiaFWKRIAAYYNaspklvgcEKREAAQCKNRWQK 112 678*****************99*********************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-6 | 50 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.013 | 51 | 118 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-5 | 52 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0016 | 55 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-7 | 56 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEFNPFTEPS NFVDLLSSQQ NVVFGNVPES QLPFFASQAT HGLNIGEETQ GSRKERRTWS 60 PTDDVVLIDA VVGNEQRSIA FWKRIAAYYN ASPKLVGCEK REAAQCKNRW QKINDLICKF 120 CGAFEAATRE RTSGQNETDV LKLAHEIFFT NYNKKFTLEH AWKELRNDQK WSELSTAKAE 180 GSSKKSERVK VSREAIGSGR ITD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013632509.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013632509.1 | 1e-151 | PREDICTED: glutathione S-transferase T3-like | ||||
TrEMBL | A0A0D3BR88 | 1e-132 | A0A0D3BR88_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g030640.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22 | 2 | 5 |