PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632200.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 31357.5 Da    PI: 9.1672
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.45.9e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  XP_013632200.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73
                    79***********************************************8 PP
2K-box75.91.1e-2595158770
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                      s++ea+++++qqe++kL+++i+ +q+ +Rh+lGe+L+sL+lkeL++Le +Lek++ ++RskK 
  XP_013632200.1  95 PSVTEANTQYYQQESSKLRRQIRDIQNLNRHILGESLGSLNLKELKNLEGRLEKGIGRVRSKKV 158
                     45899*********************************************************96 PP
3K-box22.54.7e-0918521669100
           K-box  69 KnellleqieelqkkekelqeenkaLrkklee 100
                     ++e+l+++ie++qk+e elq++n++Lr+k+ e
  XP_013632200.1 185 QHEMLVAEIEYMQKREIELQNDNMYLRSKISE 216
                     789**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3891676IPR002100Transcription factor, MADS-box
CDDcd002657.92E-441790No hitNo description
SuperFamilySSF554552.49E-321788IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-321838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003193.8E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-325374IPR002100Transcription factor, MADS-box
PfamPF014865.5E-22100214IPR002487Transcription factor, K-box
PROSITE profilePS5129712.087102220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEGGASDEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA NTQYYQQESS KLRRQIRDIQ  120
NLNRHILGES LGSLNLKELK NLEGRLEKGI GRVRSKKVNN FHFLQSLYML RLDLILDPYV  180
LFLAQHEMLV AEIEYMQKRE IELQNDNMYL RSKISERAGM QQQEASVIHQ QGTVYESSSH  240
QSEQYNRNYI PVNLLEPNQN SSDQNQPPLQ LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A1e-191784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B1e-191784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C1e-191784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D1e-191784168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P1e-191684169Myocyte-specific enhancer factor 2B
1tqe_Q1e-191684169Myocyte-specific enhancer factor 2B
1tqe_R1e-191684169Myocyte-specific enhancer factor 2B
1tqe_S1e-191684169Myocyte-specific enhancer factor 2B
5f28_A2e-191684169MEF2C
5f28_B2e-191684169MEF2C
5f28_C2e-191684169MEF2C
5f28_D2e-191684169MEF2C
6c9l_A1e-191684169Myocyte-specific enhancer factor 2B
6c9l_B1e-191684169Myocyte-specific enhancer factor 2B
6c9l_C1e-191684169Myocyte-specific enhancer factor 2B
6c9l_D1e-191684169Myocyte-specific enhancer factor 2B
6c9l_E1e-191684169Myocyte-specific enhancer factor 2B
6c9l_F1e-191684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4243420.0EU424342.1 Brassica napus shatterproof 2 (SHP2) mRNA, SHP2-a allele, complete cds.
GenBankJQ9730820.0JQ973082.1 Brassica napus Shatterproof (SHP2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632198.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_013632199.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_013632200.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_013632201.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_013632202.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_013632203.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_013632204.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_013632205.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
SwissprotP293851e-159AGL5_ARATH; Agamous-like MADS-box protein AGL5
TrEMBLA0A3P6C9F30.0A0A3P6C9F3_BRAOL; Uncharacterized protein
STRINGBra004716.1-P1e-171(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.11e-148MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Rathnakumar K, et al.
    Angiopoietin-2 mediates thrombin-induced monocyte adhesion and endothelial permeability.
    J. Thromb. Haemost., 2016. 14(8): p. 1655-67
    [PMID:27241812]
  4. Balanzà V,Roig-Villanova I,Di Marzo M,Masiero S,Colombo L
    Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks.
    Development, 2016. 143(18): p. 3372-81
    [PMID:27510967]
  5. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]