PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013632199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 272aa MW: 31357.5 Da PI: 9.1672 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.4 | 5.9e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+ XP_013632199.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 75.9 | 1.1e-25 | 95 | 158 | 7 | 70 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 s++ea+++++qqe++kL+++i+ +q+ +Rh+lGe+L+sL+lkeL++Le +Lek++ ++RskK XP_013632199.1 95 PSVTEANTQYYQQESSKLRRQIRDIQNLNRHILGESLGSLNLKELKNLEGRLEKGIGRVRSKKV 158 45899*********************************************************96 PP | |||||||
3 | K-box | 22.5 | 4.7e-09 | 185 | 216 | 69 | 100 |
K-box 69 KnellleqieelqkkekelqeenkaLrkklee 100 ++e+l+++ie++qk+e elq++n++Lr+k+ e XP_013632199.1 185 QHEMLVAEIEYMQKREIELQNDNMYLRSKISE 216 789**************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.1E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.389 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.92E-44 | 17 | 90 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-32 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.5E-22 | 100 | 214 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.087 | 102 | 220 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEGGASDEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA NTQYYQQESS KLRRQIRDIQ 120 NLNRHILGES LGSLNLKELK NLEGRLEKGI GRVRSKKVNN FHFLQSLYML RLDLILDPYV 180 LFLAQHEMLV AEIEYMQKRE IELQNDNMYL RSKISERAGM QQQEASVIHQ QGTVYESSSH 240 QSEQYNRNYI PVNLLEPNQN SSDQNQPPLQ LV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 1e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 1e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 1e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 1e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1tqe_P | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
6c9l_A | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013632199.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU424342 | 0.0 | EU424342.1 Brassica napus shatterproof 2 (SHP2) mRNA, SHP2-a allele, complete cds. | |||
GenBank | JQ973082 | 0.0 | JQ973082.1 Brassica napus Shatterproof (SHP2a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013632198.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_013632199.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_013632200.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_013632201.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_013632202.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_013632203.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_013632204.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_013632205.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL5 isoform X1 | ||||
Swissprot | P29385 | 1e-159 | AGL5_ARATH; Agamous-like MADS-box protein AGL5 | ||||
TrEMBL | A0A3P6C9F3 | 0.0 | A0A3P6C9F3_BRAOL; Uncharacterized protein | ||||
STRING | Bra004716.1-P | 1e-171 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.1 | 1e-148 | MIKC_MADS family protein |