PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632103.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 773aa    MW: 85641.7 Da    PI: 6.2995
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK887.7e-28479529252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek++sl +l+++Fs+++kdAA+ +gvc+T+LKriCRq+GI+RWP+Rki+++
  XP_013632103.1 479 EKNVSLRVLQQHFSGSLKDAARRIGVCPTTLKRICRQHGIMRWPSRKINKV 529
                     799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.085462549IPR003035RWP-RK domain
PfamPF020421.1E-25481529IPR003035RWP-RK domain
SuperFamilySSF542774.91E-22662757No hitNo description
PROSITE profilePS5174519.962673755IPR000270PB1 domain
SMARTSM006662.0E-22673755IPR000270PB1 domain
PfamPF005645.3E-17674754IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.9E-22674754No hitNo description
CDDcd064077.45E-33674754No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAHPFASREN GFGYQEHMDG LTIGSGVWSF ISDDMLSSSP TSELVNFNSF PTWCNIPFDT  60
DMLFSQYGQE MSSRSHHHSL DIDEISGKRR SVLNCTIPRS LSHSLDEKML KALSLFMQFS  120
GSGDGVLAQV WTPVKTGDQY MLSTCGQAYL LDPRLSQYRE VSRKFTFASK PNQCSYPGLP  180
GRVFISGVRE WTSNVMYYKK DEYLRVKHAI DNEVCGSIAI PVLEASGTSC CAVMEVVTSD  240
EKLNFDVEMD SVCRALQAVD LRTSVVPRPQ YLSSNQRDAL AEIQDVLRAL CHGHKLPLAL  300
TWIPNSGVLC VEETACNVND MEMEGFVHAC LDHPLREKEG IVGKAFVSNQ PSFSSDVKSY  360
DISEYPLVHH ARKHGLNAAV AIKLRSTYTG EDDYILELFL PLSLKGSLEQ QLLLDSLEVT  420
LQRVCRTLRT VSDVVGETNS TTSIFSEKSS DKDSTGSQGT CEQDMSKGRT AERKKGTIEK  480
NVSLRVLQQH FSGSLKDAAR RIGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQIVL  540
DSVHGIEGGL RFDSATGEFV SVCSSNGNNA SCELLKPESV DNTIKLEDDI ITNGSFMEVN  600
ACDQQCALKA EQSGFNGSSQ AIASGNIIEP NRSTSDSSNG SGAVMLRSSS PSMDHRNQMR  660
AHKSNSSESG SATLTVKATY REDTTRFKFD PSVGCLQLYK EVGKRFRLQE GLFQLKYFDD  720
EEEWVMLVTD SDLQECLEML VGMQKQTVKF LVRDLPARIG SSAGSNGYLG EGL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632103.10.0PREDICTED: protein NLP8
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A0D3C6250.0A0A0D3C625_BRAOL; Uncharacterized protein
STRINGBo4g194380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]