PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632077.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 511aa    MW: 58517 Da    PI: 9.9502
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.2e-15895197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffk l     + s+ l++p  f+ ++ + k+e+ t +l++  s  +Wevk+  + + +   lt+GWkeF+ a++L+ gD+++Fk ++++ f  +v++
  XP_013632077.1  8 FFKPL--LPGFHSH-LTIPVAFFVKYIEAKNEHHTTKLRSdASKITWEVKI--EDG-Q--KLTDGWKEFALAHDLRIGDILIFKQEKDMAF--HVTL 94
                    66666..5667777.***********5555666788888758889******..333.2..4***********************7776777..7766 PP

                    E CS
              B3 97 f 97
                    +
  XP_013632077.1 95 L 95
                    5 PP
2B3665.7e-21143229896
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +++l+ + l lp++f++++g++++++++++l +e+g+sW++ l  r+k ++ +++++GW++F+ angLk+g + +Fkl++r ++ +v+++
  XP_013632077.1 143 PSSLRYDSLNLPRSFVRANGLETRCGREIVLINEKGKSWTLAL--RQKLSGpTYIRRGWRSFCIANGLKTGGVYTFKLIKRGRA-PVLRL 229
                     56778899***********************************..5555555**************************996444.66665 PP
3B370.32.5e-22264352797
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +  +l+ + l lp kf +e+g++ +++ +++l++e+grsW+++l+ +++ g++++t+GW++F++angL++g + +Fkl++ ++++l +++ 
  XP_013632077.1 264 SRATLRYDTLGLPMKFSRENGLEARCG-EIVLMNEKGRSWKLNLKRKRSCGTMYITQGWRSFCSANGLRAGSSSTFKLIK-RGGTLALRLS 352
                     556778899************998887.****************98999999**************************99.5555666655 PP
4B349.48.4e-16412505599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + ++ +l++ +l lp +f++ hg+++e  ++++l d++g +W+  l+  + + +++ l +GW+eF kan +k+g++++ kl+++ ++++ +k+++
  XP_013632077.1 412 TFRPFNLEKYLLFLPLRFTRWHGINEE--TKMRLLDKNGVKWSTDLRSgKTNIDKIRLVGGWQEFFKANCVKTGESIIVKLIWDGDKSCILKFCS 504
                     55666788889***********99954..58***************7755555669****************************99999999998 PP

                     S CS
              B3  99 k 99 
                     k
  XP_013632077.1 505 K 505
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.167598IPR003340B3 DNA binding domain
CDDcd100171.67E-13695No hitNo description
SuperFamilySSF1019363.92E-186105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-227111IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-20898IPR003340B3 DNA binding domain
PfamPF023621.7E-101691IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-19129230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19131230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.494136232IPR003340B3 DNA binding domain
SMARTSM010192.6E-25137233IPR003340B3 DNA binding domain
PfamPF023621.6E-18143229IPR003340B3 DNA binding domain
CDDcd100174.43E-15146229No hitNo description
Gene3DG3DSA:2.40.330.107.8E-20251344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-17257351IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.059258355IPR003340B3 DNA binding domain
SMARTSM010191.2E-28259355IPR003340B3 DNA binding domain
PfamPF023621.2E-20264352IPR003340B3 DNA binding domain
CDDcd100175.06E-19267351No hitNo description
Gene3DG3DSA:2.40.330.101.9E-16400504IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17403499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.59408506IPR003340B3 DNA binding domain
SMARTSM010192.7E-15408506IPR003340B3 DNA binding domain
PfamPF023622.7E-14408505IPR003340B3 DNA binding domain
CDDcd100171.72E-11423503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MRMVNKRFFK PLLPGFHSHL TIPVAFFVKY IEAKNEHHTT KLRSDASKIT WEVKIEDGQK  60
LTDGWKEFAL AHDLRIGDIL IFKQEKDMAF HVTLLGPTGC EIQYESCSEE ENNFGNIPKK  120
KNSKREAESS SLDPSCFLAN IWPSSLRYDS LNLPRSFVRA NGLETRCGRE IVLINEKGKS  180
WTLALRQKLS GPTYIRRGWR SFCIANGLKT GGVYTFKLIK RGRAPVLRLS STESELEERN  240
IEKIQRNKAE SSSLDPSCFV ANISRATLRY DTLGLPMKFS RENGLEARCG EIVLMNEKGR  300
SWKLNLKRKR SCGTMYITQG WRSFCSANGL RAGSSSTFKL IKRGGTLALR LSSKETEEEE  360
EDCSLKANEV ESLSTEPESD EEGSQDEKQI KKHRSTWKAS SSQSQNRFVT LTFRPFNLEK  420
YLLFLPLRFT RWHGINEETK MRLLDKNGVK WSTDLRSGKT NIDKIRLVGG WQEFFKANCV  480
KTGESIIVKL IWDGDKSCIL KFCSKVKHET E
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632077.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A0D3C1U60.0A0A0D3C1U6_BRAOL; Uncharacterized protein
STRINGBo4g154840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein