PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013631916.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 317aa MW: 34317 Da PI: 8.8432

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013631916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.8	5.2e-33	49	104	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++YkeClkNhAa+lG+ha+DGCgEfmps++ +++++lkCaACgCHRnFHRre+ XP_013631916.1 49 FTYKECLKNHAAALGSHALDGCGEFMPSPSLVsTDPTSLKCAACGCHRNFHRREQG 104 68************************9988899****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-21	48	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.6E-31	50	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.3E-27	50	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.258	51	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.94E-18	172	244	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-29	174	244	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.4E-24	183	240	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDMTTHTTIT SPPKSPEPEP ETPTRIQPAK PISFSNGIIK RHHHPTLLFT YKECLKNHAA 60 ALGSHALDGC GEFMPSPSLV STDPTSLKCA ACGCHRNFHR REQGNDSSIP PPPSSVAATI 120 EYQPHHRHHP PPPQLPPHPP PRSPNSSSPP PISSSYMLLS LSGTNNNNLA FSGNNHHHQT 180 GSRKRFRTKF SQFQKEKMHE FADRVGWKMQ KRDEDDVREF CRQIGVDKGV LKVWMHNNKN 240 NFNRRDIQFS IAAGATEIHK TDNGGGGILA PIPAGETNNN GGNELHHSVS NGGGGFDSDS 300 GGGGGAHGGN VNGSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-19	182	241	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013631916.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631916.1	0.0	PREDICTED: zinc-finger homeodomain protein 10 isoform X1
Refseq	XP_013631917.1	0.0	PREDICTED: zinc-finger homeodomain protein 10 isoform X2
Swissprot	Q9LHF0	5e-97	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A3P6CEX5	0.0	A0A3P6CEX5_BRAOL; Uncharacterized protein
STRING	Bra025644.1-P	1e-159	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	4e-78	homeobox protein 23

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]