PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013631897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 15438.7 Da PI: 8.3148 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.2 | 4.5e-16 | 19 | 110 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k++ +d +++++ ++p + +++ ++ ++++ + g sWev + +k+++ y+ ++GW++Fv++n L ++fv+F+++g+++f v XP_013631897.1 19 FSKTFACADLSSECMRTFPFDLMKSLPKE-DLANKMVIIAKCGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMCF--DV 108 67888888999999999999999888533.46679999************..******566669**********************99999..55 PP EE CS B3 95 kv 96 + XP_013631897.1 109 NI 110 54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 13 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-17 | 14 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.37E-14 | 18 | 111 | No hit | No description |
Pfam | PF02362 | 3.0E-13 | 19 | 109 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.434 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-15 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLA NKMVIIAKCG 60 SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEIVR 120 PPIMASSNNP KSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013631897.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631897.1 | 1e-95 | PREDICTED: B3 domain-containing protein At2g35310 | ||||
Refseq | XP_022557137.1 | 1e-95 | B3 domain-containing protein At2g35310-like isoform X2 | ||||
Swissprot | Q5PNU4 | 5e-43 | Y2531_ARATH; B3 domain-containing protein At2g35310 | ||||
TrEMBL | A0A078JUU2 | 1e-87 | A0A078JUU2_BRANA; BnaAnng36900D protein | ||||
STRING | Bra021943.1-P | 1e-86 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 2e-45 | B3 family protein |
Publications ? help Back to Top | |||
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