PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631795.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 336aa    MW: 37966.1 Da    PI: 10.1974
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30270328360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eH h+k
  XP_013631795.1 270 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHSHPK 328
                     99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.6E-17223266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-32256328IPR003657WRKY domain
PROSITE profilePS5081129.792263329IPR003657WRKY domain
SuperFamilySSF1182903.01E-26266328IPR003657WRKY domain
SMARTSM007741.6E-36268328IPR003657WRKY domain
PfamPF031065.5E-26270327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEIEGANRA AVDISHRVLN LLCTPHQQDQ EYKLSETREA VFRFKRVSSL LSTTSVGHAR  60
FRRAKEPHTH LSQSIFLDQR TEPPPSQTAP VMMLRSGLHE LSTDSPTLGT RSFSLNSDAK  120
AKAPLLQLNQ SIHQNMFPEH QQLHERLEAH RHQMQKQQKH QGEIMLRKCN GGISLSFDNS  180
SCTQTMSSTR SFVSSLSIDG SVANLEGRNS FHLVGAPSST DQSLQHSKRK CLMKCGSSSR  240
CHCSKKRKHR VRRSIRVPAI SNKVADIPPD DYSWRKYGQK PIKGSPYPRG YYKCSSMRGC  300
PARKHVERCL EDPAMLIVTY EAEHSHPKLP SQAMTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20256331276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227247KRKCLMKCGSSSRCHCSKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.140191e-139leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631795.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123940.0EU912394.1 Brassica napus WRKY21-1 transcription factor (WRKY21-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631795.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-159WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D3BTG80.0A0A0D3BTG8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C2L30.0A0A3P6C2L3_BRAOL; Uncharacterized protein
STRINGBo4g056260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-142WRKY DNA-binding protein 21